Public Datasets Available on Savio¶
We make available some large public datasets used for certain workflows/software packages. These datasets are available on a read-only basis in subdirectories located at /global/scratch/collections.
The datasets include:
| Dataset | Directory | Version | Date Downloaded | Details |
|---|---|---|---|---|
| Blast | blastdb |
5.0 | 2023-03-24 | various datasets including 'nr' and 'nt' |
| ColabFold databases | colabdb |
TBD | 2022-10-27 | |
| genome/RefSeq | genomes |
TBD | 2023-04-11 |
For more details, please see the README files in the database-specific subdirectories of global/scratch/collections.
You can request additional datasets (or an update to existing datasets) through our Software/Data Request Form.