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Secure Research Data + Computing
Secure Research Data + Computing
SRDC at Berkeley
System Overview
Faculty Computing Allowance
Condo Service
User Guide
High Performance Computing
High Performance Computing
Overview
Overview
HPC at Berkeley
System Overview
Grants and Faculty Recruitment
Status and Announcements
Frequently Asked Questions
Accounts
Accounts
Accounts Overview
Faculty Computing Allowance
Faculty Computing Allowance
FCA Overview
Options When FCA Exhausted
Instructional Computing Allowance
CGRL Accounts
Accounts for Sensitive Data
User Access Agreement Form
Condos
Condos
Condo Partner Access
Condo Cluster Service
Condo Storage Service
User Guide
User Guide
User Guide Overview
Logging In
Logging In
Logging into BRC Clusters
Setting Up One-Time Passwords
Using Authy Desktop App
Data Storage and Transfer
Data Storage and Transfer
Storing Data
Public Datasets
Transferring Data
Transferring Data
Data Transfer Overview
Using Globus
Using SFTP via Filezilla
Using SCP
Transferring Data Between Savio and Box or bDrive
Sharing Data
Sharing Data
Making files accessible to group members and other Savio users
Sharing files on Savio using Globus
Staging Data for Computation
Working with Sensitive Data
Software
Software
Software Available on Savio
Installing Software
Using Software
Using Software
Using Specialized Software
Using Python
Using R
Using MATLAB
Running MATLAB jobs across multiple nodes
Using Mathematica
Using Apptainer (Singularity) Containers
Using Perl
Using Hadoop and Spark
Hardware Configuration
Running Your Jobs
Running Your Jobs
Run and Review Your Jobs
What Resources Can I Use?
Submitting Jobs
When Will My Job Start?
Monitoring Jobs
Scheduler Examples
Scheduler Configuration
Savio Service Units
GNU parallel
ht_helper Script
Migrating From PBS
Using Jupyter Notebooks, RStudio, and Other Open OnDemand Apps
Using Jupyter Notebooks, RStudio, and Other Open OnDemand Apps
Open OnDemand Overview
Jupyter Overview
Parallelization in Jupyter Notebooks
CGRL Information
Help and Training
Help and Training
Getting Help
Getting Help
How to Get Help
Questions We Can Help With
Tips on Providing an Informative Help Request
Frequently Asked Questions
Training and Tutorials
Research Data
Research Data
Research Data Overview
Data Classification & Security
Data Classification & Security
Data Classification & Security Overview
Determining the sensitivity of your data
Securing your computing and storage systems
Resources for working with sensitive data
Data Collection
Data Collection
Data Collection Overview
REDCap
REDCap
REDCap at Berkeley
Service Information
Service Information
Service Agreement
User Agreement
User Guide
User Guide
User Guide Overview
Accounts
Pre-Data Collection
Data Collection
Post-Data Collection
Trainings and Tutorials
Trainings and Tutorials
New User Instrument
Types of REDCap Projects
Basic Features
Special Features
Frequently Asked Questions
Data Management
Data Management
Data Management Overview
OCR Resources & Services
Data Transfer
Data Transfer
Data Transfer Overview
Globus at UC Berkeley
AEoD
AEoD
AEoD Overview
Cloud
Cloud
Cloud Computing Support
REDCap
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