Public Datasets Available on Savio¶
We make available some large public datasets used for certain workflows/software packages. These datasets are available on a read-only basis in subdirectories located at /global/scratch/collections.
The datasets include:
| Dataset | Directory | Version | Update/Download | Details |
|---|---|---|---|---|
| Blast | blastdb |
5.0 | monthly | various datasets including 'nr' and 'nt' |
| ColabFold databases | colabdb |
1.5.2 | every 3 months | UniRef30, BFD/Mgnfiy, ColabFold DB |
| genome/RefSeq | genomesdb |
Release 218 | yearly | fungi, invertebrate, plant, vertebrate_mammalian, vertebrate_other |
| alphafold | alphafolddb |
2.3.0 | every 3 months | BFD, MGnify, PDB70, PDB PDB seqres.UniProt, UniRef30,UniProt, UniRef90 |
For more details, please see the README files in the database-specific subdirectories of global/scratch/collections.
AlphaFold 3 Model Parameters¶
The AlphaFold 3 trained model parameters are available free of charge for non-commercial use, in accordance with the AlphaFold 3 Model Parameters Terms of Use. You may only use the model parameters if received directly from Google. To request access to the AlphaFold 3 trained model parameters, please complete the information in the linked form here. You must provide accurate and up-to-date information.
You can request additional datasets (or an update to existing datasets) through our Software/Data Request Form.